Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015946437.1_cds_XP_016488570.1_79190
CDS Infomation

[gene=LOC107808555] [db_xref=GeneID:107808555] [protein=D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like] [protein_id=XP_016488570.1] [location=join(4161..4815,5711..6087,6180..6290,6404..6499,6588..7259)] [gbkey=CDS]
Sequence

ATGGCGTCCACTCCTTCTCCTCGCACTGCCGCCACCACCCTTCAAAATTCTCTCCTCTCT
TCTTCTTCTTCTTCCTCTATAAATCATAATAAGCCTTCAAATCTCTCTTTCCTCCACGCC
TCCTCAAATTCCTCTTCCCTCAAACTCGTCCACTCTGTTTCTGCTTCTTTTTCTCCATCA
AATTCTTCTTCCACCATTTGTAATGTTCTCAAAACTGTTGAATCAGCCGACATCTCATTC
TCCAACGCGAGAGATCTTGACGGTGTCGTTTCGATTCCCAAGCCAATCATTCTCGTCTCC
GAGAAACTTGGAGAAGCGGGTCTGGACCTGCTCCGGAGTTTCGGCAACGTGGATTGTTCG
TACGACTTGTCTCCTCAGGATCTCTGCGCTAAGATCTCTCTGTGCGACGCGCTTATTGTA
CGGAGTGGGACTAAGGTGACTCGACAAGTCTTTGAGGCTGCACAGGGACGTCTTAAAGTC
GTCGGAAGAGCTGGTGTTGGGATAGACAATGTGGATCTGCAAGCTGCAACTGAATTTGGT
TGCCTCGTCGTTAACGCGCCCACAGCTAATACAATTGCTGCTGCTGAGCATGGCATCGCT
TTGCTTACCTCCATGGCCCGTAACGTTGCTCAGGCTGATGCTTCCATGAAAGCTGGAAAA
TGGTTGCGAAGCAAGTACGTGGGTGTTTCTCTTGTTGGGAAGACATTAGCAGTTATGGGC
TTTGGTAAAGTTGGTTCCGAGGTTGCAAGACGTGCAAAAGGCCTCGGTATGCATGTAATT
GCCCATGATCCATATGCACCAGCTGACAGAGCTCGCGCTATTGGTGTGGATTTGGTTTCC
TTTGAGCAGGCCATAGCCACTGCGGACTTCGTCTCACTCCACATGCCTCTTACACCTGCT
ACTAAGAAGGTATTCAATGATGACACATTCGCAAAGATGAAGAAAGGAGTCCGCCTTATA
AATGTTGCTCGAGGGGGTGTTATTGACGAAGATGCATTAGTTAGAGCCCTTGACAGTGGA
ATAGTTGCTCAGGCAGCACTTGATGTATTCACGGTGGAGCCACCACCAAAAGATAGTAAA
CTAGTGCAACATGAGAATGTCACTGTTACACCTCATCTTGGAGCAAGCACAAAAGAAGCA
CAGGAAGGAGTTGCGATTGAAATAGCTGAGGCTGTTGTTGGTGCTCTAAATGGGGAACTT
TCTGCTACCGCTGTGAATGCTCCAATGGTCCCTCCTGAGGTATTGTCCGAGTTGGCTCCT
TATGTCGTGCTTGCTGAGAAACTAGGTAGACTGGCTGTACAGCTAGTGACTGGTGGGAGT
GGAATTCAGAATGTGAAAGTGGTTTATAAATCGGCCAGGGACCCTGATAGCTTGGACACT
AGACTTCTCCGAGCCATGGTAACAAAAGGCATTATTGAGCCTATATCTGATACGATCATC
AACCTTGTAAATGCAGATTTCAGTTCAAAGCAGAAGGGTCTTCGGATTAGTGAAGAACGT
GTTATTGTTGATTCTTCTCCAGAATATCCCGTTGAGACAATCCAGGTTCAAATTAGCAAC
GTGCAATCAAGATTTGCAAGTGCTTTATCAGAGAACGGGAATATCAGCATCGAGGGGAAA
GTGAAGTACGGAGTTCCCCATCTTACACGTGTTGGATCATTTAGCGTTGATGTGAGCTTG
GAGGGTAACCTCATCCTTTGCAAACAAGTGGACCAACCTGGTATGATCGGTGAAGTTGGA
AACATACTTGGTGAGAGTAATGTGAATGTTAGCTTTATGAGCGTTGGAAGAACCGTGAAG
AGAAAGCAGGCAATTATGGCAATTGGAGTAGACGAAGAACCGAACAAGGATACTCAGAAG
AAGATTGGAGAGGTATCTGCAATTGAAGAATTTGTCTTCCTCAAACTATAG

Peptide Sequence

PEP ID

XP_016488570.1
PEP Infomation

PREDICTED: D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [Nicotiana tabacum]
Sequence

MASTPSPRTAATTLQNSLLSSSSSSSINHNKPSNLSFLHASSNSSSLKLVHSVSASFSPS
NSSSTICNVLKTVESADISFSNARDLDGVVSIPKPIILVSEKLGEAGLDLLRSFGNVDCS
YDLSPQDLCAKISLCDALIVRSGTKVTRQVFEAAQGRLKVVGRAGVGIDNVDLQAATEFG
CLVVNAPTANTIAAAEHGIALLTSMARNVAQADASMKAGKWLRSKYVGVSLVGKTLAVMG
FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFEQAIATADFVSLHMPLTPA
TKKVFNDDTFAKMKKGVRLINVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPPKDSK
LVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAP
YVVLAEKLGRLAVQLVTGGSGIQNVKVVYKSARDPDSLDTRLLRAMVTKGIIEPISDTII
NLVNADFSSKQKGLRISEERVIVDSSPEYPVETIQVQISNVQSRFASALSENGNISIEGK
VKYGVPHLTRVGSFSVDVSLEGNLILCKQVDQPGMIGEVGNILGESNVNVSFMSVGRTVK
RKQAIMAIGVDEEPNKDTQKKIGEVSAIEEFVFLKL

Transcript Sequence

Gene sequence data has not been registered.